Publications

Bibliography


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Peer-reviewed Articles (13 total, 2 accepted)


  1. Y Posor, M Eichhorn-Gruenig, D Puchkov, J Schöneberg, A Ullrich, A Lampe, R Müller, S Zarbakhsh, F Gulluni, E Hirsch, M Krauss, C Schultz, J Schmoranzer, F Noé and V Haucke (2013) Spatiotemporal control of endocytosis by phosphatidylinositol-3,4-bisphosphate. Nature, 499(7457): 233-237.
  2. J Schöneberg and F Noé (2013) ReaDDy - a software for particle based reaction diffusion dynamics in crowded cellular environments. PLOS One, 8(9): e74261.
  3. J Schöneberg, M Heck, KP Hofmann, F Noé, (2014) Explicit spatiotemporal simulation of receptor-G protein coupling in rod cell disk membranes. Biophysical Journal, 107(5): 1042-1053.
  4. J Biedermann, A Ullrich, J Schöneberg and F Noé, (2015) ReaDDyMM: fast particle-based reaction-diffusion simulations using graphical processing units. Biophysical Journal,108(3):457-61.
  5. A Ullrich, MA Böhme, J Schöneberg, H Depner, SJ Sigrist, F Noé (2015) Dynamical organization of syntaxin-1A at the presynaptic active zone. PLoS Comput. Biol., 11(9), e1004407.
  6. M Gunkel*, J Schöneberg*, W Alkhaldi, S Irsen, F Noé, U B Kaupp and A Al-Amoudi, (2015) Higher-order architecture of rhodopsin in intact photoreceptor controls phototransduction kinetics. Structure, 23(4):628-38. * equal contribution
  7. F Paul*, C Wehmeyer*, E T Abualrous, H Wu, M D Crabtree, J Schöneberg, J Clarke, C Freund, T R Weikl, Frank Noé, (2017) Protein-peptide association kinetics beyond the seconds timescale from atomistic simulations. Nature Communications, accepted. *equal contribution
  8. J Schöneberg*, M Lehmann*, A Ullrich, Y Posor, W-T Lo, G Lichtner, J Schmoranzer, Volker Haucke, Frank Noé. (2017) Lipid-mediated PX-BAR domain recruitment couples local membrane constriction to endocytic vesicle fission. Nature Communications. * equal contribution
  9. M G Lin, J Schöneberg, C W Davies, X Ren, and J H Hurley (2018) The dynamic Atg13-free conformation of the Atg1 EAT domain is required for phagophore expansion, Molecular Biology of the Cell, 29(10).
  10. B M Qureshi, E Behrmann, J Schöneberg, J Loerke, J Bürger, T Mielke, J Giesebrecht, F Noé, T D Lamb, K P Hofmann, C MT Spahn, M Heck (2018) It takes two transducins to activate the cGMP-phosphodiesterase 6 in retinal rods. Open Biology, 8(10).
  11. C Chang*, L N Young*, K L Morris, S v. Bülow, J Schöneberg, H Yamamoto-Imoto, Y Oe, K Yamamoto, S Nakamura, G Stjepanovic, G Hummer, T Yoshimori and J H Hurley (2018) Bidirectional control of autophagy by BECN1 BARA domain dynamics. Molecular Cell, in press. * equal contribution
  12. J Schöneberg, D Dambournet, T-L Liu, R Forster, D Hockemeyer, E Betzig, D G Drubin (2018) 4D cell biology: big data image analytics and lattice light-sheet imaging reveal dynamics of clathrin-mediated endocytosis in stem cell derived intestinal organoids. Molecular Biology of the Cell, 29(24).
  13. J Schöneberg, M R Pavlin*, S Yan*, M Righini, I-H Lee, L-A Carlson, A H Bahrami, D H Goldman, X Ren, G Hummer, C Bustamante and J H Hurley (2018) ATP-dependent force generation and membrane scission by ESCRT-III and Vps4. Science, 362(6421). * equal contribution


Reviews (2 total)


  1. J Schöneberg, A Ullrich, F Noé, (2014) Simulation tools for particle-based reaction-diffusion dynamics in continuous space. BMC Biophysics, 7(11).
  2. J Schöneberg*, I-H Lee*, JH Iwasa, JH Hurley (2016) Reverse-topology membrane scission by the ESCRT proteins. Nature Reviews Molecular and Cell Biology. * equal contribution


Book Chapters (1 total)


  1. R Vasan, M S Akamatsu, J Schöneberg, and P Rangamani (2018) Intracellular membrane trafficking: modeling local movements in cells. Cell Movement: Modeling and Applications. Springer.


Preprints (2 total)


  1. J Schöneberg, A Ullrich, Y Posor, V Haucke, F Noé (2013) Spatiotemporal model of a key step in endocytosis: SNX9 recruitment via phosphoinositides. arXiv:1307.4614 [q-bio.BM].
  2. J Schöneberg, S Yan, M Righini, M R Pavlin, I-H Lee, L-A Carlson, A H Bahrami, D H Goldman, X Ren, G Hummer, C Bustamante, J Hurley. (2018) ATP-dependent force generation and membrane scission by ESCRT-III and Vps4. bioRxiv, doi: https://doi.org/10.1101/262170.


Publication Gifs

Y Posor, M Eichhorn-Gruenig, D Puchkov, J Schöneberg, A Ullrich, A Lampe, R Müller, S Zarbakhsh, F Gulluni, E Hirsch, M Krauss, C Schultz, J Schmoranzer, F Noé and V Haucke (2013) Spatiotemporal control of endocytosis by phosphatidylinositol-3,4-bisphosphate. Nature, 499(7457): 233-237.

J Schöneberg, A Ullrich, F Noé, (2014) Simulation tools for particle-based reaction-diffusion dynamics in continuous space. BMC Biophysics, 7(11).

J Schöneberg, M Heck, KP Hofmann, F Noé, (2014) Explicit spatiotemporal simulation of receptor-G protein coupling in rod cell disk membranes. Biophysical Journal, 107(5): 1042-1053.

J Biedermann, A Ullrich, J Schöneberg and F Noé, (2015) ReaDDyMM: fast particle-based reaction-diffusion simulations using graphical processing units. Biophysical Journal,108(3):457-61.

A Ullrich, MA Böhme, J Schöneberg, H Depner, SJ Sigrist, F Noé (2015) Dynamical organization of syntaxin-1A at the presynaptic active zone. PLoS Comput. Biol., 11(9), e1004407.

M Gunkel*, J Schöneberg*, W Alkhaldi, S Irsen, F Noé, U B Kaupp and A Al-Amoudi, (2015) Higher-order architecture of rhodopsin in intact photoreceptor controls phototransduction kinetics. Structure, 23(4):628-38. * equal contribution

J Schöneberg*, I-H Lee*, JH Iwasa, JH Hurley (2016) Reverse-topology membrane scission by the ESCRT proteins. Nature Reviews Molecular and Cell Biology. * equal contribution

F Paul*, C Wehmeyer*, E T Abualrous, H Wu, M D Crabtree, J Schöneberg, J Clarke, C Freund, T R Weikl, Frank Noé, (2017) Protein-peptide association kinetics beyond the seconds timescale from atomistic simulations. Nature Communications, accepted. *equal contribution

J Schöneberg*, M Lehmann*, A Ullrich, Y Posor, W-T Lo, G Lichtner, J Schmoranzer, Volker Haucke, Frank Noé. (2017) Lipid-mediated PX-BAR domain recruitment couples local membrane constriction to endocytic vesicle fission. Nature Communications. * equal contribution

J Schöneberg, S Yan, M Righini, M R Pavlin, I-H Lee, L-A Carlson, A H Bahrami, D H Goldman, X Ren, G Hummer, C Bustamante, J Hurley. (2018) ATP-dependent force generation and membrane scission by ESCRT-III and Vps4. bioRxiv, doi: https://doi.org/10.1101/262170.